J3_5APO_025

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

5APO|1|7|U|12||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5APO_025 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.0922

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5APO|1|7|C|9||||P_1
5APO|1|7|C|10||||P_1
5APO|1|7|A|11||||P_1
5APO|1|7|U|12||||P_1
5APO|1|7|A|13||||P_1
5APO|1|7|U|14||||P_1
*
5APO|1|7|A|66||||P_1
5APO|1|7|G|67||||P_1
*
5APO|1|7|U|111||||P_1
5APO|1|7|G|112||||P_1

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21-A