J3_8P9A_066

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

8P9A|1|AS|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8P9A|1|AS|C|9
8P9A|1|AS|C|10
8P9A|1|AS|A|11
8P9A|1|AS|U|12
8P9A|1|AS|A|13
8P9A|1|AS|U|14
*
8P9A|1|AS|A|66
8P9A|1|AS|G|67
*
8P9A|1|AS|U|111
8P9A|1|AS|G|112

Current chains

Chain AS

5S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CG

60S ribosomal protein L5

Chain CL

60S ribosomal protein L10

Chain CV

60S ribosomal protein L21-A