J3_5CZP_026

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5CZP|1|RA|A|2518, 5CZP|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5CZP_026 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0522

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5CZP|1|RA|C|2517
5CZP|1|RA|A|2518
5CZP|1|RA|U|2519
5CZP|1|RA|C|2520
*
5CZP|1|RA|G|2545
5CZP|1|RA|U|2546
5CZP|1|RA|U|2547
*
5CZP|1|RA|A|2561
5CZP|1|RA|U|2562
5CZP|1|RA|U|2563
5CZP|1|RA|A|2564
5CZP|1|RA|A|2565
5CZP|1|RA|A|2566
5CZP|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14