J3_5D8B_004
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5D8B|1|UC|A|975, 5D8B|1|UC|G|976, 5D8B|1|UC|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1176
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5D8B|1|UC|U|955
5D8B|1|UC|U|956
5D8B|1|UC|U|957
5D8B|1|UC|A|958
5D8B|1|UC|A|959
5D8B|1|UC|U|960
5D8B|1|UC|U|961
5D8B|1|UC|C|962
*
5D8B|1|UC|G|973
5D8B|1|UC|A|974
5D8B|1|UC|A|975
5D8B|1|UC|G|976
5D8B|1|UC|A|977
5D8B|1|UC|A|978
5D8B|1|UC|C|979
5D8B|1|UC|C|980
5D8B|1|UC|U|981
5D8B|1|UC|U|982
5D8B|1|UC|A|983
5D8B|1|UC|C|984
*
5D8B|1|UC|G|1221
5D8B|1|UC|G|1222
5D8B|1|UC|C|1223
5D8B|1|UC|G|1224
5D8B|1|UC|A|1225
Current chains
- Chain UC
- 16S ribosomal RNA
Nearby chains
- Chain KA
- 30S ribosomal protein S10
- Chain NA
- 30S ribosomal protein S13
- Chain OA
- 30S ribosomal protein S14
- Chain TA
- 30S ribosomal protein S19
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