J3_5D8B_019
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5D8B_019 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1519
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5D8B|1|YC|U|943
5D8B|1|YC|G|944
5D8B|1|YC|G|945
5D8B|1|YC|A|946
*
5D8B|1|YC|U|1235
5D8B|1|YC|A|1236
5D8B|1|YC|C|1237
*
5D8B|1|YC|G|1337
5D8B|1|YC|G|1338
5D8B|1|YC|A|1339
5D8B|1|YC|A|1340
Current chains
- Chain YC
- 16S ribosomal RNA
Nearby chains
- Chain BD
- Transfer RNA; tRNA
- Chain FC
- 30S ribosomal protein S9
- Chain FD
- Transfer RNA; tRNA
- Chain JC
- 30S ribosomal protein S13
- Chain RC
- 30S ribosomal protein Thx
Coloring options: