J3_5D8B_044

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CAAUG*CCCAGUUCGGAUU*AUGAAGCCG

Length

27 nucleotides

Bulged bases

5D8B|1|UC|U|1240, 5D8B|1|UC|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|UC|C|1237
5D8B|1|UC|A|1238
5D8B|1|UC|A|1239
5D8B|1|UC|U|1240
5D8B|1|UC|G|1241
*
5D8B|1|UC|C|1296
5D8B|1|UC|C|1297
5D8B|1|UC|C|1298
5D8B|1|UC|A|1299
5D8B|1|UC|G|1300
5D8B|1|UC|U|1301
5D8B|1|UC|U|1302
5D8B|1|UC|C|1303
5D8B|1|UC|G|1304
5D8B|1|UC|G|1305
5D8B|1|UC|A|1306
5D8B|1|UC|U|1307
5D8B|1|UC|U|1308
*
5D8B|1|UC|A|1329
5D8B|1|UC|U|1330
5D8B|1|UC|G|1331
5D8B|1|UC|A|1332
5D8B|1|UC|A|1333
5D8B|1|UC|G|1334
5D8B|1|UC|C|1335
5D8B|1|UC|C|1336
5D8B|1|UC|G|1337

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain HA

30S ribosomal protein S7

Chain NA

30S ribosomal protein S13

Chain VA

30S ribosomal protein Thx