J3_5D8B_055

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GC*GGAAUCUUC*GAGC

Length

15 nucleotides

Bulged bases

5D8B|1|YC|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|YC|G|46
5D8B|1|YC|C|47
*
5D8B|1|YC|G|361
5D8B|1|YC|G|362
5D8B|1|YC|A|363
5D8B|1|YC|A|364
5D8B|1|YC|U|365
5D8B|1|YC|C|366
5D8B|1|YC|U|367
5D8B|1|YC|U|368
5D8B|1|YC|C|369
*
5D8B|1|YC|G|392
5D8B|1|YC|A|393
5D8B|1|YC|G|394
5D8B|1|YC|C|395

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain IC

30S ribosomal protein S12

Chain MC

30S ribosomal protein S16