J3_5D8B_057

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

5D8B|1|YC|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5D8B_057 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.142

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5D8B|1|YC|C|586
5D8B|1|YC|G|587
5D8B|1|YC|G|588
*
5D8B|1|YC|C|651
5D8B|1|YC|U|652
5D8B|1|YC|A|653
5D8B|1|YC|G|654
*
5D8B|1|YC|C|754
5D8B|1|YC|G|755

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain EC

30S ribosomal protein S8

Chain IC

30S ribosomal protein S12

Chain LC

30S ribosomal protein S15

Chain NC

30S ribosomal protein S17