J3_5D8B_062

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAACCC*GGGGUGC*GAGCC

Length

19 nucleotides

Bulged bases

5D8B|1|YC|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|YC|G|1002
5D8B|1|YC|G|1003
5D8B|1|YC|A|1004
5D8B|1|YC|A|1005
5D8B|1|YC|C|1006
5D8B|1|YC|C|1007
5D8B|1|YC|C|1008
*
5D8B|1|YC|G|1021
5D8B|1|YC|G|1022
5D8B|1|YC|G|1023
5D8B|1|YC|G|1024
5D8B|1|YC|U|1025
5D8B|1|YC|G|1026
5D8B|1|YC|C|1027
*
5D8B|1|YC|G|1034
5D8B|1|YC|A|1035
5D8B|1|YC|G|1036
5D8B|1|YC|C|1037
5D8B|1|YC|C|1038

Current chains

Chain YC

16S ribosomal RNA

Nearby chains