J3_5D8H_001

3D structure

PDB id

5D8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5D8H|1|A|G|1165
5D8H|1|A|G|1166
5D8H|1|A|A|1167
*
5D8H|1|A|U|1191
5D8H|1|A|U|1192
5D8H|1|A|U|1193
5D8H|1|A|A|1194
5D8H|1|A|A|1195
5D8H|1|A|A|1196
5D8H|1|A|G|1197
*
5D8H|1|A|C|1212
5D8H|1|A|A|1213
5D8H|1|A|C|1214

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L10

Chain C

50S ribosomal protein L11