3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UCGAUC*GGAAU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5DAT_010 not in the Motif Atlas
Homologous match to J3_5TBW_010
Geometric discrepancy: 0.0513
The information below is about J3_5TBW_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_70383.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

5DAT|1|1|U|1526
5DAT|1|1|C|1527
5DAT|1|1|G|1528
5DAT|1|1|A|1529
5DAT|1|1|U|1530
5DAT|1|1|C|1531
*
5DAT|1|1|G|1591
5DAT|1|1|G|1592
5DAT|1|1|A|1593
5DAT|1|1|A|1594
5DAT|1|1|U|1595
*
5DAT|1|1|A|1612
5DAT|1|1|A|1613

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain N5
60S ribosomal protein L25
Chain O4
60S ribosomal protein L34-A (eL34)
Chain O8
60S ribosomal protein L38
Chain O9
60S ribosomal protein L39

Coloring options:


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