3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
5DAT|1|5|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5DAT_033 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.0566
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

5DAT|1|5|U|502
5DAT|1|5|C|503
*
5DAT|1|5|G|588
5DAT|1|5|A|589
5DAT|1|5|G|590
5DAT|1|5|G|591
5DAT|1|5|A|592
5DAT|1|5|C|593
5DAT|1|5|U|594
5DAT|1|5|G|595
5DAT|1|5|C|596
5DAT|1|5|G|597
*
5DAT|1|5|C|606
5DAT|1|5|A|607
5DAT|1|5|A|608
5DAT|1|5|G|609
5DAT|1|5|G|610
5DAT|1|5|A|611

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain l6
60S ribosomal protein L6-A
Chain l7
60S ribosomal protein L7-A
Chain o2
60S ribosomal protein L32

Coloring options:


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