J3_5DAT_035
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DAT_035 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1119
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5DAT|1|5|U|829
5DAT|1|5|A|830
5DAT|1|5|G|831
*
5DAT|1|5|C|863
5DAT|1|5|G|864
5DAT|1|5|U|865
5DAT|1|5|A|866
5DAT|1|5|G|867
*
5DAT|1|5|U|892
5DAT|1|5|C|893
5DAT|1|5|G|894
5DAT|1|5|A|895
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain o4
- 60S ribosomal protein L34-A (eL34)
- Chain q3
- 60S ribosomal protein L43-A
Coloring options: