J3_5DAT_093
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CA*UAACU*AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DAT_093 not in the Motif Atlas
- Homologous match to J3_8P9A_087
- Geometric discrepancy: 0.1062
- The information below is about J3_8P9A_087
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75962.2
- Basepair signature
- cWW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5DAT|1|5|C|1631
5DAT|1|5|A|1632
*
5DAT|1|5|U|1641
5DAT|1|5|A|1642
5DAT|1|5|A|1643
5DAT|1|5|C|1644
5DAT|1|5|U|1645
*
5DAT|1|5|A|1810
5DAT|1|5|G|1811
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain n7
- 60S ribosomal protein L27-A
- Chain o4
- 60S ribosomal protein L34-A (eL34)
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