J3_5DC3_054
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DC3_054 not in the Motif Atlas
- Homologous match to J3_8P9A_081
- Geometric discrepancy: 0.081
- The information below is about J3_8P9A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5DC3|1|6|U|1293
5DC3|1|6|G|1294
*
5DC3|1|6|U|1303
5DC3|1|6|G|1304
5DC3|1|6|U|1305
5DC3|1|6|C|1306
*
5DC3|1|6|G|1318
5DC3|1|6|A|1319
5DC3|1|6|U|1320
5DC3|1|6|A|1321
5DC3|1|6|A|1322
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c7
- 40S ribosomal protein S17-A
- Chain s0
- 40S ribosomal protein S0-A
- Chain s2
- 40S ribosomal protein S2
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