J3_5DC3_069
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 5DC3|1|2|A|46, 5DC3|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DC3_069 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0765
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DC3|1|2|A|41
5DC3|1|2|G|42
5DC3|1|2|A|43
5DC3|1|2|U|44
5DC3|1|2|U|45
5DC3|1|2|A|46
5DC3|1|2|A|47
5DC3|1|2|G|48
*
5DC3|1|2|C|431
5DC3|1|2|G|432
5DC3|1|2|C|433
5DC3|1|2|G|434
5DC3|1|2|C|435
5DC3|1|2|A|436
5DC3|1|2|A|437
5DC3|1|2|A|438
5DC3|1|2|U|439
*
5DC3|1|2|A|464
5DC3|1|2|G|465
5DC3|1|2|U|466
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D3
- 40S ribosomal protein S23-A
- Chain S8
- 40S ribosomal protein S8-A
- Chain S9
- 40S ribosomal protein S9-A
Coloring options: