J3_5DFE_003
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5DFE|1|QA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DFE_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0959
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5DFE|1|QA|U|672
5DFE|1|QA|G|673
*
5DFE|1|QA|C|717
5DFE|1|QA|G|718
5DFE|1|QA|C|719
5DFE|1|QA|C|720
5DFE|1|QA|G|721
5DFE|1|QA|A|722
5DFE|1|QA|U|723
5DFE|1|QA|G|724
5DFE|1|QA|G|725
*
5DFE|1|QA|C|732
5DFE|1|QA|A|733
5DFE|1|QA|G|734
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QF
- 30S ribosomal protein S6
- Chain QK
- 30S ribosomal protein S11
- Chain QO
- 30S ribosomal protein S15
- Chain QR
- 30S ribosomal protein S18
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