J3_5DFE_022

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

5DFE|1|RA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DFE_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0543

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5DFE|1|RA|G|1344
5DFE|1|RA|C|1345
5DFE|1|RA|G|1346
5DFE|1|RA|G|1347
5DFE|1|RA|G|1348
5DFE|1|RA|A|1349
5DFE|1|RA|C|1350
*
5DFE|1|RA|G|1381
5DFE|1|RA|G|1382
5DFE|1|RA|C|1383
5DFE|1|RA|A|1384
5DFE|1|RA|G|1385
*
5DFE|1|RA|C|1402
5DFE|1|RA|C|1403

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain RX

50S ribosomal protein L23