J3_5DFE_025

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5DFE|1|RA|A|2518, 5DFE|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DFE_025 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0416

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5DFE|1|RA|C|2517
5DFE|1|RA|A|2518
5DFE|1|RA|U|2519
5DFE|1|RA|C|2520
*
5DFE|1|RA|G|2545
5DFE|1|RA|U|2546
5DFE|1|RA|U|2547
*
5DFE|1|RA|A|2561
5DFE|1|RA|U|2562
5DFE|1|RA|U|2563
5DFE|1|RA|A|2564
5DFE|1|RA|A|2565
5DFE|1|RA|A|2566
5DFE|1|RA|G|2567

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14