J3_5DFE_063

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5DFE|1|RA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DFE_063 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0555

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5DFE|1|RA|C|297
5DFE|1|RA|G|298
5DFE|1|RA|A|299
5DFE|1|RA|A|300
5DFE|1|RA|G|301
*
5DFE|1|RA|C|316
5DFE|1|RA|G|317
5DFE|1|RA|C|318
5DFE|1|RA|C|319
5DFE|1|RA|A|320
5DFE|1|RA|G|321
5DFE|1|RA|A|322
5DFE|1|RA|G|323
5DFE|1|RA|A|324
5DFE|1|RA|G|325
*
5DFE|1|RA|C|337
5DFE|1|RA|G|338
5DFE|1|RA|U|339
5DFE|1|RA|A|340
5DFE|1|RA|G|341

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24