J3_5DGE_036

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DGE_036 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2195

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5DGE|1|5|G|1230
5DGE|1|5|A|1231
5DGE|1|5|C|1232
*
5DGE|1|5|G|1256
5DGE|1|5|C|1257
5DGE|1|5|U|1258
5DGE|1|5|A|1259
5DGE|1|5|A|1260
5DGE|1|5|G|1261
5DGE|1|5|G|1262
*
5DGE|1|5|C|1277
5DGE|1|5|A|1278
5DGE|1|5|C|1279

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12-A

Chain p0

60S acidic ribosomal protein P0