J3_5DGF_032
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5DGF|1|5|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGF_032 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0683
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|5|U|502
5DGF|1|5|C|503
*
5DGF|1|5|G|588
5DGF|1|5|A|589
5DGF|1|5|G|590
5DGF|1|5|G|591
5DGF|1|5|A|592
5DGF|1|5|C|593
5DGF|1|5|U|594
5DGF|1|5|G|595
5DGF|1|5|C|596
5DGF|1|5|G|597
*
5DGF|1|5|C|606
5DGF|1|5|A|607
5DGF|1|5|A|608
5DGF|1|5|G|609
5DGF|1|5|G|610
5DGF|1|5|A|611
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain l6
- 60S ribosomal protein L6-A
- Chain l7
- 60S ribosomal protein L7-A
- Chain o2
- 60S ribosomal protein L32
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