J3_5DGF_040

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GUAACU*AG

Length

11 nucleotides

Bulged bases

5DGF|1|5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DGF_040 not in the Motif Atlas

Homologous match to J3_5TBW_011

Geometric discrepancy: 0.1121

The information below is about J3_5TBW_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25670.1

Basepair signature

cWW-F-F-F-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5DGF|1|5|C|1631
5DGF|1|5|A|1632
5DGF|1|5|C|1633
*
5DGF|1|5|G|1640
5DGF|1|5|U|1641
5DGF|1|5|A|1642
5DGF|1|5|A|1643
5DGF|1|5|C|1644
5DGF|1|5|U|1645
*
5DGF|1|5|A|1810
5DGF|1|5|G|1811

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n7

60S ribosomal protein L27-A

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38