J3_5DGF_062
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5DGF|1|1|U|343, 5DGF|1|1|A|351, 5DGF|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGF_062 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0501
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5DGF|1|1|C|340
5DGF|1|1|G|341
5DGF|1|1|A|342
5DGF|1|1|U|343
5DGF|1|1|A|344
5DGF|1|1|G|345
5DGF|1|1|C|346
5DGF|1|1|G|347
5DGF|1|1|A|348
5DGF|1|1|A|349
5DGF|1|1|C|350
5DGF|1|1|A|351
5DGF|1|1|A|352
5DGF|1|1|G|353
5DGF|1|1|U|354
5DGF|1|1|A|355
5DGF|1|1|C|356
*
5DGF|1|1|G|363
5DGF|1|1|G|364
5DGF|1|1|A|365
5DGF|1|1|A|366
5DGF|1|1|A|367
5DGF|1|1|G|368
*
5DGF|1|4|C|21
5DGF|1|4|U|22
5DGF|1|4|U|23
5DGF|1|4|G|24
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain N6
- 60S ribosomal protein L26-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
Coloring options: