J3_5DGV_031
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_031 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.0472
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5DGV|1|5|A|369
5DGV|1|5|U|370
5DGV|1|5|G|371
5DGV|1|5|A|372
5DGV|1|5|A|373
5DGV|1|5|A|374
5DGV|1|5|A|375
5DGV|1|5|G|376
*
5DGV|1|5|C|403
5DGV|1|5|G|404
*
5DGV|1|8|C|19
5DGV|1|8|U|20
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o9
- 60S ribosomal protein L39
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