J3_5DGV_055
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 5DGV|1|6|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_055 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.0643
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5DGV|1|6|U|1283
5DGV|1|6|C|1284
5DGV|1|6|U|1285
5DGV|1|6|U|1286
5DGV|1|6|A|1287
5DGV|1|6|G|1288
*
5DGV|1|6|C|1327
5DGV|1|6|G|1328
5DGV|1|6|A|1329
5DGV|1|6|G|1330
5DGV|1|6|A|1331
5DGV|1|6|C|1332
*
5DGV|1|6|G|1419
5DGV|1|6|C|1420
5DGV|1|6|A|1421
5DGV|1|6|A|1422
5DGV|1|6|U|1423
5DGV|1|6|A|1424
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s2
- 40S ribosomal protein S2
- Chain s3
- 40S ribosomal protein S3
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