J3_5DGV_076
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5DGV|1|5|U|343, 5DGV|1|5|A|351, 5DGV|1|8|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_076 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0347
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DGV|1|5|C|340
5DGV|1|5|G|341
5DGV|1|5|A|342
5DGV|1|5|U|343
5DGV|1|5|A|344
5DGV|1|5|G|345
5DGV|1|5|C|346
5DGV|1|5|G|347
5DGV|1|5|A|348
5DGV|1|5|A|349
5DGV|1|5|C|350
5DGV|1|5|A|351
5DGV|1|5|A|352
5DGV|1|5|G|353
5DGV|1|5|U|354
5DGV|1|5|A|355
5DGV|1|5|C|356
*
5DGV|1|5|G|363
5DGV|1|5|G|364
5DGV|1|5|A|365
5DGV|1|5|A|366
5DGV|1|5|A|367
5DGV|1|5|G|368
*
5DGV|1|8|C|21
5DGV|1|8|U|22
5DGV|1|8|U|23
5DGV|1|8|G|24
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
Coloring options: