J3_5DGV_086

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DGV_086 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1001

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5DGV|1|5|G|1230
5DGV|1|5|A|1231
5DGV|1|5|C|1232
*
5DGV|1|5|G|1256
5DGV|1|5|C|1257
5DGV|1|5|U|1258
5DGV|1|5|A|1259
5DGV|1|5|A|1260
5DGV|1|5|G|1261
5DGV|1|5|G|1262
*
5DGV|1|5|C|1277
5DGV|1|5|A|1278
5DGV|1|5|C|1279

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12-A (uL11)

Chain p0

60S acidic ribosomal protein P0