J3_5DM6_003

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGG*CCGAAC*GAUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|C|698
5DM6|1|X|A|699
5DM6|1|X|G|700
5DM6|1|X|G|701
*
5DM6|1|X|C|731
5DM6|1|X|C|732
5DM6|1|X|G|733
5DM6|1|X|A|734
5DM6|1|X|A|735
5DM6|1|X|C|736
*
5DM6|1|X|G|760
5DM6|1|X|A|761
5DM6|1|X|U|762
5DM6|1|X|G|763

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2