J3_5DM6_008
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAGC*GUAGAAG
- Length
- 14 nucleotides
- Bulged bases
- 5DM6|1|X|G|2334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DM6|1|X|C|2295
5DM6|1|X|U|2296
5DM6|1|X|C|2297
*
5DM6|1|X|G|2321
5DM6|1|X|A|2322
5DM6|1|X|G|2323
5DM6|1|X|C|2324
*
5DM6|1|X|G|2331
5DM6|1|X|U|2332
5DM6|1|X|A|2333
5DM6|1|X|G|2334
5DM6|1|X|A|2335
5DM6|1|X|A|2336
5DM6|1|X|G|2337
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L27
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: