J3_5DM6_011
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCAG
- Length
- 15 nucleotides
- Bulged bases
- 5DM6|1|Y|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DM6_011 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2168
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5DM6|1|Y|C|12
5DM6|1|Y|C|13
5DM6|1|Y|C|14
5DM6|1|Y|A|15
5DM6|1|Y|U|16
5DM6|1|Y|A|17
5DM6|1|Y|G|18
*
5DM6|1|Y|C|70
5DM6|1|Y|G|71
5DM6|1|Y|C|72
*
5DM6|1|Y|G|109
5DM6|1|Y|U|110
5DM6|1|Y|C|111
5DM6|1|Y|A|112
5DM6|1|Y|G|113
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
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