J3_5DM6_017
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCC*GGCUUAGUGAACC*GAUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 5DM6|1|X|A|2388, 5DM6|1|X|U|2390, 5DM6|1|X|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DM6_017 not in the Motif Atlas
- Homologous match to J3_4WF9_019
- Geometric discrepancy: 0.1832
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5DM6|1|X|G|2282
5DM6|1|X|C|2283
5DM6|1|X|C|2284
5DM6|1|X|C|2285
*
5DM6|1|X|G|2383
5DM6|1|X|G|2384
5DM6|1|X|C|2385
5DM6|1|X|U|2386
5DM6|1|X|U|2387
5DM6|1|X|A|2388
5DM6|1|X|G|2389
5DM6|1|X|U|2390
5DM6|1|X|G|2391
5DM6|1|X|A|2392
5DM6|1|X|A|2393
5DM6|1|X|C|2394
5DM6|1|X|C|2395
*
5DM6|1|X|G|2421
5DM6|1|X|A|2422
5DM6|1|X|U|2423
5DM6|1|X|C|2424
5DM6|1|X|A|2425
5DM6|1|X|A|2426
5DM6|1|X|C|2427
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
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