J3_5DM6_019
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAAAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5DM6|1|X|A|72, 5DM6|1|X|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DM6_019 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1196
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DM6|1|X|A|56
5DM6|1|X|C|57
*
5DM6|1|X|G|70
5DM6|1|X|A|71
5DM6|1|X|A|72
5DM6|1|X|A|73
5DM6|1|X|A|74
5DM6|1|X|G|75
5DM6|1|X|C|76
*
5DM6|1|X|G|110
5DM6|1|X|A|111
5DM6|1|X|U|112
5DM6|1|X|G|113
5DM6|1|X|U|114
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain Q
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L29
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