J3_5DM6_020

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UUCAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

5DM6|1|X|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|G|1055
5DM6|1|X|G|1056
5DM6|1|X|A|1057
*
5DM6|1|X|U|1081
5DM6|1|X|U|1082
5DM6|1|X|C|1083
5DM6|1|X|A|1084
5DM6|1|X|A|1085
5DM6|1|X|A|1086
5DM6|1|X|G|1087
5DM6|1|X|A|1088
5DM6|1|X|G|1089
5DM6|1|X|U|1090
5DM6|1|X|G|1091
*
5DM6|1|X|C|1100
5DM6|1|X|U|1101
5DM6|1|X|C|1102
5DM6|1|X|A|1103
5DM6|1|X|C|1104

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain F

50S ribosomal protein L11