J3_5DM8_003
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAGCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 5DM8|1|X|G|686, 5DM8|1|X|G|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DM8_003 not in the Motif Atlas
- Geometric match to J3_7A0S_004
- Geometric discrepancy: 0.0865
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
5DM8|1|X|U|683
5DM8|1|X|G|684
5DM8|1|X|A|685
5DM8|1|X|G|686
5DM8|1|X|C|687
5DM8|1|X|U|688
5DM8|1|X|A|689
*
5DM8|1|X|U|773
5DM8|1|X|A|774
5DM8|1|X|G|775
*
5DM8|1|X|C|791
5DM8|1|X|G|792
5DM8|1|X|A|793
5DM8|1|X|A|794
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- 50S ribosomal protein L2
Coloring options: