J3_5DOX_013

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5DOX|1|1a|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_013 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1972

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

5DOX|1|1a|C|990
5DOX|1|1a|U|991
5DOX|1|1a|U|992
5DOX|1|1a|G|993
5DOX|1|1a|A|994
5DOX|1|1a|C|995
5DOX|1|1a|A|996
5DOX|1|1a|U|997
*
5DOX|1|1a|A|1044
5DOX|1|1a|C|1045
5DOX|1|1a|A|1046
5DOX|1|1a|G|1047
*
5DOX|1|1a|C|1210
5DOX|1|1a|U|1211
5DOX|1|1a|U|1212
5DOX|1|1a|A|1213
5DOX|1|1a|C|1214
5DOX|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z