J3_5DOX_015
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 5DOX|1|1a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DOX_015 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1666
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5DOX|1|1a|C|1116
5DOX|1|1a|G|1117
5DOX|1|1a|C|1118
*
5DOX|1|1a|G|1155
5DOX|1|1a|G|1156
5DOX|1|1a|A|1157
5DOX|1|1a|C|1158
5DOX|1|1a|U|1159
5DOX|1|1a|G|1160
5DOX|1|1a|C|1161
*
5DOX|1|1a|G|1175
5DOX|1|1a|A|1176
5DOX|1|1a|G|1177
5DOX|1|1a|G|1178
5DOX|1|1a|A|1179
5DOX|1|1a|A|1180
5DOX|1|1a|G|1181
5DOX|1|1a|G|1182
5DOX|1|1a|A|1183
5DOX|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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