J3_5DOX_017

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5DOX|1|2A|G|686, 5DOX|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_017 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0554

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5DOX|1|2A|C|683
5DOX|1|2A|G|684
5DOX|1|2A|A|685
5DOX|1|2A|G|686
5DOX|1|2A|C|687
5DOX|1|2A|U|688
5DOX|1|2A|A|689
*
5DOX|1|2A|U|773
5DOX|1|2A|A|774
5DOX|1|2A|G|775
*
5DOX|1|2A|C|791
5DOX|1|2A|G|792
5DOX|1|2A|A|793
5DOX|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2