J3_5DOX_024

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5DOX|1|2A|A|2518, 5DOX|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_024 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0752

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5DOX|1|2A|C|2517
5DOX|1|2A|A|2518
5DOX|1|2A|U|2519
5DOX|1|2A|C|2520
*
5DOX|1|2A|G|2545
5DOX|1|2A|U|2546
5DOX|1|2A|U|2547
*
5DOX|1|2A|A|2561
5DOX|1|2A|U|2562
5DOX|1|2A|U|2563
5DOX|1|2A|A|2564
5DOX|1|2A|A|2565
5DOX|1|2A|A|2566
5DOX|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14