3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
5DOX|1|2A|A|2518, 5DOX|1|2A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5DOX_024 not in the Motif Atlas
Homologous match to J3_9DFE_017
Geometric discrepancy: 0.0752
The information below is about J3_9DFE_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

5DOX|1|2A|C|2517
5DOX|1|2A|A|2518
5DOX|1|2A|U|2519
5DOX|1|2A|C|2520
*
5DOX|1|2A|G|2545
5DOX|1|2A|U|2546
5DOX|1|2A|U|2547
*
5DOX|1|2A|A|2561
5DOX|1|2A|U|2562
5DOX|1|2A|U|2563
5DOX|1|2A|A|2564
5DOX|1|2A|A|2565
5DOX|1|2A|A|2566
5DOX|1|2A|G|2567

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2O
50S ribosomal protein L14

Coloring options:


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