3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
5DOX|1|2a|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5DOX_032 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1824
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5DOX|1|2a|C|1116
5DOX|1|2a|G|1117
5DOX|1|2a|C|1118
*
5DOX|1|2a|G|1155
5DOX|1|2a|G|1156
5DOX|1|2a|A|1157
5DOX|1|2a|C|1158
5DOX|1|2a|U|1159
5DOX|1|2a|G|1160
5DOX|1|2a|C|1161
*
5DOX|1|2a|G|1175
5DOX|1|2a|A|1176
5DOX|1|2a|G|1177
5DOX|1|2a|G|1178
5DOX|1|2a|A|1179
5DOX|1|2a|A|1180
5DOX|1|2a|G|1181
5DOX|1|2a|G|1182
5DOX|1|2a|A|1183
5DOX|1|2a|G|1184

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2b
30S ribosomal protein S2
Chain 2i
30S ribosomal protein S9
Chain 2n
30S ribosomal protein S14 type Z

Coloring options:


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