J3_5DOX_039

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5DOX|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_039 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0551

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5DOX|1|1A|C|297
5DOX|1|1A|G|298
5DOX|1|1A|A|299
5DOX|1|1A|A|300
5DOX|1|1A|G|301
*
5DOX|1|1A|C|316
5DOX|1|1A|G|317
5DOX|1|1A|C|318
5DOX|1|1A|C|319
5DOX|1|1A|A|320
5DOX|1|1A|G|321
5DOX|1|1A|A|322
5DOX|1|1A|G|323
5DOX|1|1A|A|324
5DOX|1|1A|G|325
*
5DOX|1|1A|C|337
5DOX|1|1A|G|338
5DOX|1|1A|U|339
5DOX|1|1A|A|340
5DOX|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24