3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_006 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.0848
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5E7K|1|13|C|1063
5E7K|1|13|G|1064
5E7K|1|13|U|1065
5E7K|1|13|C|1066
5E7K|1|13|A|1067
5E7K|1|13|G|1068
*
5E7K|1|13|C|1107
5E7K|1|13|G|1108
5E7K|1|13|C|1109
5E7K|1|13|A|1110
5E7K|1|13|A|1111
5E7K|1|13|C|1112
5E7K|1|13|C|1113
*
5E7K|1|13|G|1187
5E7K|1|13|A|1188
5E7K|1|13|C|1189
5E7K|1|13|G|1190
5E7K|1|13|A|1191
5E7K|1|13|C|1192
5E7K|1|13|G|1193

Current chains

Chain 13
16S rRNA

Nearby chains

Chain 1E
30S ribosomal protein S2
Chain 1I
30S ribosomal protein S10
Chain 2E
30S ribosomal protein S3
Chain 4E
30S ribosomal protein S5
Chain 5I
30S ribosomal protein S14 type Z
Chain 6E
30S ribosomal protein S7
Chain 8E
30S ribosomal protein S9

Coloring options:


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