3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAGCUA*UAG*CGAG
Length
14 nucleotides
Bulged bases
5E7K|1|14|G|686, 5E7K|1|14|G|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_009 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.1121
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

5E7K|1|14|C|683
5E7K|1|14|G|684
5E7K|1|14|A|685
5E7K|1|14|G|686
5E7K|1|14|C|687
5E7K|1|14|U|688
5E7K|1|14|A|689
*
5E7K|1|14|U|773
5E7K|1|14|A|774
5E7K|1|14|G|775
*
5E7K|1|14|C|791
5E7K|1|14|G|792
5E7K|1|14|A|793
5E7K|1|14|G|794

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain L5
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5327 s
Application loaded.