J3_5E7K_019
3D structure
- PDB id
- 5E7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUACC*GGGCGAC
- Length
- 29 nucleotides
- Bulged bases
- 5E7K|1|1G|A|975, 5E7K|1|1G|G|976, 5E7K|1|1G|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5E7K_019 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.1446
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5E7K|1|1G|G|954
5E7K|1|1G|U|955
5E7K|1|1G|U|956
5E7K|1|1G|U|957
5E7K|1|1G|A|958
5E7K|1|1G|A|959
5E7K|1|1G|U|960
5E7K|1|1G|U|961
5E7K|1|1G|C|962
*
5E7K|1|1G|G|973
5E7K|1|1G|A|974
5E7K|1|1G|A|975
5E7K|1|1G|G|976
5E7K|1|1G|A|977
5E7K|1|1G|A|978
5E7K|1|1G|C|979
5E7K|1|1G|C|980
5E7K|1|1G|U|981
5E7K|1|1G|U|982
5E7K|1|1G|A|983
5E7K|1|1G|C|984
5E7K|1|1G|C|985
*
5E7K|1|1G|G|1220
5E7K|1|1G|G|1221
5E7K|1|1G|G|1222
5E7K|1|1G|C|1223
5E7K|1|1G|G|1224
5E7K|1|1G|A|1225
5E7K|1|1G|C|1226
Current chains
- Chain 1G
- 16S rRNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
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