J3_5E7K_022

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

5E7K|1|1G|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E7K_022 not in the Motif Atlas

Geometric match to J3_6CZR_025

Geometric discrepancy: 0.2722

The information below is about J3_6CZR_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

5E7K|1|1G|C|1116
5E7K|1|1G|G|1117
5E7K|1|1G|C|1118
*
5E7K|1|1G|G|1155
5E7K|1|1G|G|1156
5E7K|1|1G|A|1157
5E7K|1|1G|C|1158
5E7K|1|1G|U|1159
5E7K|1|1G|G|1160
5E7K|1|1G|C|1161
*
5E7K|1|1G|G|1175
5E7K|1|1G|A|1176
5E7K|1|1G|G|1177
5E7K|1|1G|G|1178
5E7K|1|1G|A|1179
5E7K|1|1G|A|1180
5E7K|1|1G|G|1181
5E7K|1|1G|G|1182
5E7K|1|1G|A|1183
5E7K|1|1G|G|1184

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 1A

30S ribosomal protein S10

Chain 5A

30S ribosomal protein S14 type Z

Chain 62

30S ribosomal protein S7

Chain 82

30S ribosomal protein S9