3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
5E7K|1|14|A|1384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_046 not in the Motif Atlas
Homologous match to J3_9DFE_012
Geometric discrepancy: 0.1513
The information below is about J3_9DFE_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

5E7K|1|14|G|1344
5E7K|1|14|C|1345
5E7K|1|14|G|1346
5E7K|1|14|G|1347
5E7K|1|14|G|1348
5E7K|1|14|A|1349
5E7K|1|14|C|1350
*
5E7K|1|14|G|1381
5E7K|1|14|G|1382
5E7K|1|14|C|1383
5E7K|1|14|A|1384
5E7K|1|14|G|1385
*
5E7K|1|14|C|1402
5E7K|1|14|C|1403

Current chains

Chain 14
23S rRNA

Nearby chains

Chain B5
50S ribosomal protein L23

Coloring options:


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