J3_5E7K_051

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E7K_051 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0847

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5E7K|1|1G|G|46
5E7K|1|1G|C|47
*
5E7K|1|1G|G|361
5E7K|1|1G|G|362
5E7K|1|1G|A|363
5E7K|1|1G|A|364
5E7K|1|1G|U|365
5E7K|1|1G|C|366
5E7K|1|1G|U|367
*
5E7K|1|1G|A|393
5E7K|1|1G|G|394
5E7K|1|1G|C|395

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 7A

30S ribosomal protein S16