J3_5E7K_064

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5E7K|1|1H|C|34, 5E7K|1|1H|U|448, 5E7K|1|1H|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E7K_064 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.2576

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5E7K|1|1H|C|32
5E7K|1|1H|U|33
5E7K|1|1H|C|34
5E7K|1|1H|G|35
*
5E7K|1|1H|C|445
5E7K|1|1H|G|446
5E7K|1|1H|A|447
5E7K|1|1H|U|448
5E7K|1|1H|A|449
5E7K|1|1H|G|450
5E7K|1|1H|C|451
5E7K|1|1H|G|452
5E7K|1|1H|C|453
5E7K|1|1H|A|454
5E7K|1|1H|C|455
5E7K|1|1H|C|456
5E7K|1|1H|A|457
5E7K|1|1H|G|458
5E7K|1|1H|U|459
5E7K|1|1H|A|460
5E7K|1|1H|C|461
*
5E7K|1|1H|G|468
5E7K|1|1H|G|469
5E7K|1|1H|A|470
5E7K|1|1H|A|471
5E7K|1|1H|A|472
5E7K|1|1H|G|473

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain C8

50S ribosomal protein L20

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34