J3_5E7K_068

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E7K_068 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0699

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5E7K|1|1H|G|1424
5E7K|1|1H|G|1425
5E7K|1|1H|G|1426
5E7K|1|1H|A|1427
5E7K|1|1H|C|1428
5E7K|1|1H|G|1429
*
5E7K|1|1H|C|1564
5E7K|1|1H|C|1565
*
5E7K|1|1H|G|1568
5E7K|1|1H|A|1569
5E7K|1|1H|A|1570
5E7K|1|1H|A|1571
5E7K|1|1H|A|1572
5E7K|1|1H|G|1573
5E7K|1|1H|C|1574

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 11

50S ribosomal protein L2