J3_5E81_018
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5E81_018 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1085
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5E81|1|1G|U|943
5E81|1|1G|G|944
5E81|1|1G|G|945
5E81|1|1G|A|946
*
5E81|1|1G|U|1235
5E81|1|1G|A|1236
5E81|1|1G|C|1237
*
5E81|1|1G|G|1337
5E81|1|1G|G|1338
5E81|1|1G|A|1339
5E81|1|1G|A|1340
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1B
- 30S ribosomal protein Thx
- Chain 2L
- Transfer RNA; tRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 82
- 30S ribosomal protein S9
Coloring options: